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1

The Proteomes of Human Parotid and Submandibular/Sublingual Gland Salivas Collected as the Ductal Secretions

Denny, Paul, Hagen, Fred K., Hardt, Markus, Liao, Lujian, Yan, Weihong, Arellanno, Martha, Bassilian, Sara, Bedi, Gurrinder S., Boontheung, Pinmannee, Cociorva, Daniel, Delahunty, Claire M., Denny, Tr

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.46 MB

english, 2008

2

[IEEE Comput. Soc 16th International Parallel and Distributed Processing Symposium. IPDPS 2002 - Ft. Lauderdale, FL, USA (15-19 April 2002)] Proceedings 16th International Parallel and Distributed Processing Symposium - A performance optimization framework for compilation of tensor contraction expressions into parallel

Baumgartner, G., Bernholdt, D.E., Cociorva, D., Harrison, R., Chi-Chung Lam,, Nooijen, M., Ramanujam, J., Sadayappan, P.

Year:

2002

Language:

english

File:

PDF, 373 KB

english, 2002

3

[ACM Press the ACM SIGPLAN 2002 Conference - Berlin, Germany (2002.06.17-2002.06.19)] Proceedings of the ACM SIGPLAN 2002 Conference on Programming language design and implementation - PLDI '02 - Space-time trade-off optimization for a class of electronic structure calculations

Cociorva, Daniel, Baumgartner, Gerald, Lam, Chi-Chung, Sadayappan, P., Ramanujam, J., Nooijen, Marcel, Bernholdt, David E., Harrison, Robert

Year:

2002

Language:

english

File:

PDF, 177 KB

english, 2002

4

Oligosaccharides as inhibitors of mycobacterial arabinosyltransferases. Di- and trisaccharides containing C-3 modified arabinofuranosyl residues

Oana M. Cociorva, Sudagar S. Gurcha, Gurdyal S. Besra, Todd L. Lowary

Journal:

Bioorganic & Medicinal Chemistry

Year:

2005

Language:

english

File:

PDF, 370 KB

english, 2005

5

Synthesis of oligosaccharides as potential inhibitors of mycobacterial arabinosyltransferases. Di- and trisaccharides containing C-5 modified arabinofuranosyl residues

Oana M. Cociorva, Todd L. Lowary

Journal:

Carbohydrate Research

Year:

2004

Language:

english

File:

PDF, 365 KB

english, 2004

6

Memory-optimal evaluation of expression trees involving large objects

Chi-Chung Lam, Thomas Rauber, Gerald Baumgartner, Daniel Cociorva, P. Sadayappan

Journal:

Computer Languages, Systems & Structures

Year:

2011

Language:

english

File:

PDF, 605 KB

english, 2011

7

Comparison of Different Signal Thresholds on Data Dependent Sampling in Orbitrap and LTQ Mass Spectrometry for the Identification of Peptides and Proteins in Complex Mixtures

Catherine C.L. Wong, Daniel Cociorva, John D. Venable, Tao Xu, John R. Yates III

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2009

Language:

english

File:

PDF, 830 KB

english, 2009

8

2,3-Anhydrosugars in glycoside bond synthesis. Application to the preparation of C-2 functionalized α-d-arabinofuranosides

Oana M Cociorva, Todd L Lowary

Journal:

Year:

2004

Language:

english

File:

PDF, 275 KB

english, 2004

9

Quasiparticle calculations of band offsets at AlN–GaN interfaces

Daniel Cociorva, Wilfried G Aulbur, John W Wilkins

Journal:

Solid State Communications

Year:

2002

Language:

english

File:

PDF, 112 KB

english, 2002

10

Can the false-discovery rate be misleading?

Rodrigo Barboza, Daniel Cociorva, Tao Xu, Valmir C. Barbosa, Jonas Perales, Richard H. Valente, Felipe M. G. França, John R. Yates III, Paulo C. Carvalho

Journal:

Year:

2011

Language:

english

File:

PDF, 74 KB

english, 2011

11

MS1, MS2, and SQT—three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications

W. Hayes McDonald, David L. Tabb, Rovshan G. Sadygov, Michael J. MacCoss, John Venable, Johannes Graumann, Jeff R. Johnson, Daniel Cociorva, John R. Yates III

Journal:

Rapid Communications in Mass Spectrometry

Year:

2004

Language:

english

File:

PDF, 240 KB

english, 2004

12

Large-scale database searching using tandem mass spectra: Looking up the answer in the back of the book

Sadygov, Rovshan G, Cociorva, Daniel, Yates, John R

Journal:

Year:

2004

Language:

english

File:

PDF, 219 KB

english, 2004

13

Search engine processor: Filtering and organizing peptide spectrum matches

Paulo C. Carvalho, Juliana S. G. Fischer, Tao Xu, Daniel Cociorva, Tiago S. Balbuena, Richard H. Valente, Jonas Perales, John R. Yates III, Valmir C. Barbosa

Journal:

Year:

2012

Language:

english

File:

PDF, 732 KB

english, 2012

14

Synthesis and structure–activity relationship of 4-quinolone-3-carboxylic acid based inhibitors of glycogen synthase kinase-3β

Oana M. Cociorva, Bei Li, Tyzoon Nomanbhoy, Qiang Li, Ayako Nakamura, Kai Nakamura, Masahiro Nomura, Kyoko Okada, Shigeki Seto, Kazuhiro Yumoto, Marek Liyanage, Melissa C. Zhang, Arwin Aban, Brandon L

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2011

Language:

english

File:

PDF, 567 KB

english, 2011

15

6-Position optimization of tricyclic 4-quinolone-based inhibitors of glycogen synthase kinase-3β: Discovery of nitrile derivatives with picomolar potency

Bei Li, Oana M. Cociorva, Tyzoon Nomanbhoy, Qiang Li, Kai Nakamura, Masahiro Nomura, Kyoko Okada, Kazuhiro Yumoto, Marek Liyanage, Melissa C. Zhang, Arwin Aban, Anna Katrin Szardenings, John W. Kozari

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2012

Language:

english

File:

PDF, 376 KB

english, 2012

16

Performance of a Linear Ion Trap-Orbitrap Hybrid for Peptide Analysis

Yates, John R., Cociorva, Daniel, Liao, Lujian, Zabrouskov, Vlad

Journal:

Analytical Chemistry

Year:

2006

Language:

english

File:

PDF, 234 KB

english, 2006

17

Toward objective evaluation of proteomic algorithms

Yates, John R, Park, Sung Kyu Robin, Delahunty, Claire M, Xu, Tao, Savas, Jeffrey N, Cociorva, Daniel, Carvalho, Paulo Costa

Journal:

Year:

2012

Language:

english

File:

PDF, 80 KB

english, 2012

18

Automatic code generation for many-body electronic structure methods: the tensor contraction engine‡‡

Auer, Alexander A., Baumgartner, Gerald, Bernholdt, David E., Bibireata, Alina, Choppella, Venkatesh, Cociorva, Daniel, Gao, Xiaoyang, Harrison, Robert, Krishnamoorthy, Sriram, Krishnan, Sandhya, Lam,

Journal:

Molecular Physics

Year:

2006

Language:

english

File:

PDF, 246 KB

english, 2006

19

Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans

Dong, M.-Q., Venable, J. D., Au, N., Xu, T., Park, S. K., Cociorva, D., Johnson, J. R., Dillin, A., Yates, J. R.

Journal:

Year:

2007

Language:

english

File:

PDF, 255 KB

english, 2007

20

Synthesis of High-Performance Parallel Programs for a Class of ab Initio Quantum Chemistry Models

Baumgartner, G., Auer, A., Bernholdt, D.E., Bibireata, A., Choppella, V., Cociorva, D., Gao, X, Harrison, R.J., Hirata, S., Krishnamoorthy, S., Krishnan, S., Lam, C., Lu, Q, Nooijen, M., Pitzer, R.M.,

Journal:

Proceedings of the IEEE

Year:

2005

Language:

english

File:

PDF, 528 KB

english, 2005

21

3-Mercaptopropanol as a Traceless Linker for Chemical and Enzymatic Synthesis of Oligosaccharides

Merbouh, Nabyl, Wallner, Fredrik K., Cociorva, Oana M., Seeberger, Peter H.

Journal:

Organic Letters

Year:

2007

Language:

english

File:

PDF, 137 KB

english, 2007

22

Proteomics of Pyrococcus furiosus ( Pfu ): Identification of Extracted Proteins by Three Independent Methods

Wong, Catherine C. L., Cociorva, Daniel, Miller, Christine A., Schmidt, Alexander, Monell, Craig, Aebersold, Ruedi, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2013

Language:

english

File:

PDF, 967 KB

english, 2013

23

Hit-to-lead optimization and kinase selectivity of imidazo[1,2-a]quinoxalin-4-amine derived JNK1 inhibitors

Li, Bei, Cociorva, Oana M., Nomanbhoy, Tyzoon, Weissig, Helge, Li, Qiang, Nakamura, Kai, Liyanage, Marek, Zhang, Melissa C., Shih, Ann Y., Aban, Arwin, Hu, Yi, Cajica, Julia, Pham, Lan, Kozarich, John

Journal:

Bioorganic & Medicinal Chemistry Letters

Year:

2013

Language:

english

File:

PDF, 2.00 MB

english, 2013

24

Motif-Specific Sampling of Phosphoproteomes

Ruse, Cristian I., McClatchy, Daniel B., Lu, Bingwen, Cociorva, Daniel, Motoyama, Akira, Park, Sung Kyu, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 3.43 MB

english, 2008

25

Quantitative Phosphoproteomic Analysis of the Tumor Necrosis Factor Pathway

Cantin, Greg T., Venable, John D., Cociorva, Daniel, Yates, John R.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 185 KB

english, 2006

26

Charge Prediction Machine: Tool for Inferring Precursor Charge States of Electron Transfer Dissociation Tandem Mass Spectra

Carvalho, Paulo C., Cociorva, Daniel, Wong, Catherine C. L., Carvalho, Maria da Gloria da C., Barbosa, Valmir C., Yates, John R.

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 844 KB

english, 2009

27

Optimization of Mass Spectrometry-Compatible Surfactants for Shotgun Proteomics

Chen, Emily I., Cociorva, Daniel, Norris, Jeremy L., Yates, John R.

Journal:

Journal of Proteome Research

Year:

2007

Language:

english

File:

PDF, 437 KB

english, 2007

28

Cross-Correlation Algorithm for Calculation of Peptide Molecular Weight from Tandem Mass Spectra

Venable, John D., Xu, Tao, Cociorva, Daniel, Yates, John R.

Journal:

Analytical Chemistry

Year:

2006

Language:

english

File:

PDF, 221 KB

english, 2006

29

[IEEE 2010 IEEE International Conference on Automation, Quality and Testing, Robotics (AQTR 2010) - Cluj-Napoca, Romania (2010.05.28-2010.05.30)] 2010 IEEE International Conference on Automation, Quality and Testing, Robotics (AQTR) - Information, information quantum, knowledge

Cociorva, S. N., Meza, S. N., Meza, R. M.

Year:

2010

Language:

english

File:

PDF, 249 KB

english, 2010

30

[IEEE Proceedings IEEE International Conference on Cluster Computing CLUSTR-03 - Hong Kong, China (2003.12.4-2003.12.4)] Proceedings IEEE International Conference on Cluster Computing CLUSTR-03 - Efficient parallel out-of-core matrix transposition

Krisnamoorthy,, Baumgartner,, Cociorva,, Chi-Chung Lam,, Sadyappan,

Year:

2003

Language:

english

File:

PDF, 329 KB

english, 2003

31

[IEEE Comput. Soc International Parallel and Distributed Processing Symposium (IPDPS 2003) - Nice, France (22-26 April 2003)] Proceedings International Parallel and Distributed Processing Symposium - Global communication optimization for tensor contraction expressions under memory constraints

Cociorva, D., Xiaoyang Gao,, Krishnan, S., Baumgartner, G., Chi-Chung Lam,, Sadayappan, P., Ramanujam, J.

Year:

2003

Language:

english

File:

PDF, 271 KB

english, 2003

32

Management of quality-related costs. The case of Portuguese companies

Pires, António Ramos, Cociorva, Aliona, Saraiva, Margarida, Novas, Jorge Casas, Rosa, Álvaro

Journal:

Total Quality Management & Business Excellence

Year:

2013

Language:

english

File:

PDF, 238 KB

english, 2013

33

YADA: a tool for taking the most out of high-resolution spectra

Carvalho, P. C., Xu, T., Han, X., Cociorva, D., Barbosa, V. C., Yates, J. R.

Journal:

Year:

2009

Language:

english

File:

PDF, 196 KB

english, 2009

34

A favorable outcome of a post-myocardial infarction ventricular septal rupture

Manea, Paloma, Ghiuru, Rodica, Cociorva, Flavia, Balasanian, Mircea

Journal:

Anadolu Kardiyoloji Dergisi/The Anatolian Journal of Cardiology

Year:

2013

Language:

english

File:

PDF, 2.14 MB

english, 2013

35

Space-time trade-off optimization for a class of electronic structure calculations

Cociorva, Daniel, Baumgartner, Gerald, Lam, Chi-Chung, Sadayappan, P., Ramanujam, J., Nooijen, Marcel, Bernholdt, David E., Harrison, Robert

Journal:

ACM SIGPLAN Notices

Year:

2002

Language:

english

File:

PDF, 177 KB

english, 2002

36

XDIA: improving on the label-free data-independent analysis

Carvalho, P. C., Han, X., Xu, T., Cociorva, D., Carvalho, M. d. G., Barbosa, V. C., Yates, J. R.

Journal:

Year:

2010

Language:

english

File:

PDF, 67 KB

english, 2010

37

[IEEE ACM/IEEE SC 2002 Conference - Baltimore, MD, USA (2002.11.16-2002.11.22)] ACM/IEEE SC 2002 Conference (SC'02) - A High-Level Approach to Synthesis of High-Performance Codes for Quantum Chemistry

Baumgartner, G., Bernholdt, D.E., Cociorva, D., Harrison, R., So Hirata,, Chi-Chung Lam,, Nooijen, M., Pitzer, R., Ramanujam, J., Sadayappan, P.

Year:

2002

Language:

english

File:

PDF, 176 KB

english, 2002

38

[ACM Press the 15th international conference - Sorrento, Italy (2001..-..)] Proceedings of the 15th international conference on Supercomputing - ICS '01 - Loop optimization for a class of memory-constrained computations

Cociorva, D., Wilkins, J. W., Lam, C., Baumgartner, G., Ramanujam, J., Sadayappan, P.

Year:

2001

Language:

english

File:

PDF, 157 KB

english, 2001

39

ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity

Xu, T., Park, S.K., Venable, J.D., Wohlschlegel, J.A., Diedrich, J.K., Cociorva, D., Lu, B., Liao, L., Hewel, J., Han, X., Wong, C.C.L., Fonslow, B., Delahunty, C., Gao, Y., Shah, H., Yates, J.R.

Journal:

Journal of Proteomics

Year:

2015

Language:

english

File:

PDF, 1.04 MB

english, 2015

40

Efficient parallel out-of-core matrix transposition

Krishnamoorthy, Sriram, Baumgartner, Gerald, Cociorva, Daniel, Lam, Chi-Chung, Sadayappan, P.

Journal:

International Journal of High Performance Computing and Networking

Year:

2004

Language:

english

File:

PDF, 122 KB

english, 2004

41

[IEEE 2008 IEEE International Conference on Automation, Quality and Testing, Robotics - Cluj-Napoca, Romania (2008.05.22-2008.05.25)] 2008 IEEE International Conference on Automation, Quality and Testing, Robotics - Electronic nose for comfort quality assessment

Cociorva, Sorin Nicolae

Year:

2008

Language:

english

File:

PDF, 151 KB

english, 2008

42

Indoor Air Quality Evaluation in Intelligent Building

Cociorva, Sorin, Iftene, Andreea

Journal:

Energy Procedia

Year:

2017

Language:

english

File:

PDF, 263 KB

english, 2017

43

Determination the optimal tilt and azimuth angle of photovoltaic system for maximum energy in Bucharest region, Romania - Case Study

Mitiu, Mihaela Andreea, Olteanu, Marius Viorel, Deak, Gyorgy, Raischi, Natalia Simona, Cociorva, Danut, Cui, W.

Journal:

E3S Web of Conferences

Year:

2019

File:

PDF, 389 KB

2019